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2009 |
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Chase JM, Biro EG, Ryberg WA, Smith KG. Predators temper the relative importance of stochastic processes in the assembly of prey metacommunities. Ecology Letters. 2009;12:1210–1218. |
Graham CH, Parra JL, Rahbek C, McGuire JA. Phylogenetic structure in tropical hummingbird communities. Proceedings of the National Academy of Sciences. 2009;106:19673–19678. |
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Cantarel B. L., Coutinho P. M., Rancurel C., Bernard T., Lombard V., Henrissat B. (2009). The carbohydrate-active enzymes database (CAZy): an expert resource for glycogenomics. Nucleic Acids Res. 37, D233–D238. |
Gihring T. M., Humphrys M., Mills H. J., Huettel M., Kostka J. E. (2009). Identification of phytodetritus-degrading microbial communities in sublittoral Gulf of Mexico sands. Limnol. Oceanogr. 54, 1073–1083. |
Han C., Spring S., Lapidus A., Del Rio T. G., Tice H., Copeland A., Cheng J.-F., Lucas S., Chen F., Nolan M., Bruce D., Hugenholtz P., Kyrpides N. C., Klenk H.-P., Detter J. C. (2009). Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3T). Stand. Genomic Sci. 1, 54–62. doi: 10.4056/sigs.22138. |
Hildebrandt M. A., Hoffmann C., Sherrill-Mix S. A., Keilbaugh S. A., Hamady M., Chen Y. Y., Knight R., Ahima R. S., Bushman F., Wu G. D. (2009). High-fat diet determines the composition of the murine gut microbiome independently of obesity. Gastroenterology 137, 1716–1724, e 1711.–1712. |
Kim H.-J., Miller A. J., Mcgowan J., Carter M. L. (2009). Coastal phytoplankton blooms in the Southern California Bight. Prog. Oceanogr. 82, 137–147. |
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Lopez-Sanchez M. J., Neef A., Peretó J., Patiño-Navarrete R., Pignatelli M., Latorre A., Moya A. (2009). Evolutionary convergence and nitrogen metabolism in Blattabacterium strain Bge, primary endosymbiont of the cockroach Blattella germanica. PLoS Genet. 5, e1000721. doi: 10.1371/journal.pgen.1000721. |
Lu J., Santo Domingo J. W., Hill S., Edge T. A. (2009). Microbial diversity and host-specific sequences of Canada goose feces. Appl. Environ. Microbiol. 75, 5919–5926. |
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Mavrommatis K., Gronow S., Saunders E., Land M., Lapidus A., Copeland A., Del Rio T. G., Nolan M., Lucas S., Chen F., Tice H., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Pati A., Ivanova N., Chen A., Palaniappan K., Chain P., Hauser L., Chang Y.-J., Jeffries C. D., Brettin T., Detter J. C., Han C., Bristow J., Göker M., Rohde M., Eisen J. A., Markowitz V., Kyrpides N. C., Klenk H.-P., Hugenholtz P. (2009). Complete genome sequence of Capnocytophaga ochracea type strain (VPI 2845T). Stand. Genomic Sci. 1, 101–109. doi: 10.4056/sigs.15195. |
McBride M. J., Xie G., Martens E. C., Lapidus A., Henrissat B., Rhodes R. G., Goltsman E., Wang W., Xu J., Hunnicutt D. W., Staroscik A. M., Hoover T. R., Cheng Y. Q., Stein J. L. (2009). Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis. Appl. Environ. Microbiol. 75, 6864–6875. |
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. Nolan M., Tindall B. J., Pomrenke H., Lapidus A., Copeland A., Glavina Del Rio T., Lucas S., Chen F., Tice H., Cheng J. F., Saunders E., Han C., Bruce D., Goodwin L., Chain P., Pitluck S., Ovchinikova G., Pati A., Ivanova N., Mavromatis K., Chen A., Palaniappan K., Land M., Hauser L., Chang Y. J., Jeffries C. D., Brettin T., Göker M., Bristow J., Eisen J. A., Markowitz V., Hugenholtz P., Kyrpides N. C., Klenk H. P., Detter J. C. (2009). Complete genome sequence of Rhodothermus marinus type strain (R-10). Stand. Genomic Sci. 1, 283–290. doi: 10.4056/sigs.46736. |
Oh H. M., Giovannoni S. J., Lee K., Ferriera S., Johnson J., Cho J. C. (2009). Complete genome sequence of Robiginitalea biformata HTCC2501. J. Bacteriol. 191, 7144–7145. doi: 10.1128/JB.01191-09. |
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Woyke T., Xie G., Copeland A., Gonzalez J. M., Han C., Kiss H., Saw J. H., Senin P., Yang C., Chatterji S., Cheng J. F., Eisen J. A., Sieracki M. E., Stepanauskas R. (2009). Assembling the marine metagenome, one cell at a time. PLoS ONE 4, e5299. doi: 10.1371/journal.pone.0005299. |
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Mika KB, Imamura G, Chang C, Conway V, Fernandez G, Griffith JF, Kampalath RA, Lee CM, Lin CC, Moreno R. Pilot-and bench-scale testing of faecal indicator bacteria survival in marine beach sand near point sources. J. Appl. Microbiol. 2009;107(1):72–84. |
Yamahara KM, Walters SP, Boehm AB. Growth of enterococci in unaltered, unseeded beach sands subjected to tidal wetting. Appl. Environ. Microbiol. 2009;75(6):1517–1524. |
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Boehm AB, Yamahara KM, Love DC, Peterson BM, McNeill K, Nelson KL. Covariation and Photoinactivation of Traditional and Novel Indicator Organisms and Human Viruses at a Sewage-Impacted Marine Beach. Environ. Sci. Technol. 2009;43(21):8046–8052. |
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Shi Y, Tyson GW, DeLong EF. Metatranscriptomics reveals unique microbial small RNAs in the ocean's water column. Nature. 2009;459:266–269. |
Temperton B, Field D, Oliver A, Tiwari B, Mühling M, Joint I, Gilbert JA. Bias in assessments of marine microbial biodiversity in fosmid libraries as evaluated by pyrosequencing. ISME J. 2009;3:792–796. |
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